Let h be an element of L2(G) orthogonal to A(G). For f and g in A(G), one has F(f)⋅F(g)=F(f∗g)∈A(G), hence h⋅F(f) is orthogonal to F(g). Thus, for every f∈A(G), the function h⋅F(f) is orthogonal to A(G). But h⋅F(f)∈L1(G), and A(G) is dense in C0(G), therefore the measure hF(f)⋅ν is zero, that is to say that hF(f) is ν-locally negligible (INT, V, §5, no3, cor. 2 of prop. 3). In particular, h is ν-locally negligible on the set Ωf of characters χ such that F(f)(χ)=0. By Corollary 2, it follows that h is ν-locally negligible, hence zero since h belongs to L2(G). This concludes the proof.
Bourbaki sets the proof directly after the statement, and the corpus does not separate them, so what is above is the statement and its proof together.